Archive for the ‘medical informatic and technology UPDATE’ category

A Novel Segmentation, Mutual Information Network Framework for EEG Analysis of Motor Tasks

May 16th, 2009

Background:
Monitoring the functional connectivity between brain regions is becoming increasingly important in elucidating brain functionality in normal and disease states. Current methods of detecting networks in the recorded electroencephalogram (EEG) such as correlation and coherence are limited by the fact that they assume stationarity of the relationship between channels, and rely on linear dependencies. In contrast to diseases of the brain cortex (e.g. Alzheimer’s disease), with motor disorders such as Parkinson’s disease (PD) the EEG abnormalities are most apparent during performance of dynamic motor tasks, but this makes the stationarity assumption untenable.
Methods:
We therefore propose a novel EEG segmentation method based on the temporal dynamics of the cross-spectrogram of the computed Independent Components (ICs). We then utilize mutual information (MI) as the metric for determining also nonlinear statistical dependencies between EEG channels. Graphical theoretical analysis is then applied to the derived MI networks. The method was applied to EEG data recorded from six normal subjects and seven PD subjects off medication. One-way analysis of variance (ANOVA) tests demonstrated statistically significant difference in the connectivity patterns between groups.
Results:
The results suggested that PD subjects are unable to independently recruit different areas of the brain while performing simultaneous tasks compared to individual tasks, but instead they attempt to recruit disparate clusters of synchronous activity to maintain behavioral performance.
Conclusions:
The proposed segmentation/MI network method appears to be a promising approach for analyzing the EEG recorded during dynamic behaviors.

source

Size dependent heat generation of magnetite nanoparticles under AC magnetic field for cancer therapy

May 16th, 2009

Background:
We have developed magnetic cationic liposomes (MCLs) that contained magnetic nanoparticles as heating mediator for applying them to local hyperthermia. The heating performance of the MCLs is significantly affected by the property of the incorporated magnetite nanoparticles. We estimated heating capacity of magnetite nanoparticles by measuring its specific absorption rate (SAR) against irradiation of the alternating magnetic field (AMF).MethodMagnetite nanoparticles which have various specific-surface-area (SSA) are dispersed in the sample tubes, subjected to various AMF and studied SAR.ResultHeat generation of magnetite particles under variable AMF conditions was summarized by the SSA. There were two maximum SAR values locally between 12 m2/g to 190 m2/g of the SSA in all ranges of applied AMF frequency and those values increased followed by the intensity of AMF power. One of the maximum values was observed at approximately 90 m2/g of the SSA particles and the other was observed at approximately 120 m2/g of the SSA particles. A boundary value of the SAR for heat generation was observed around 110 m2/g of SSA particles and the effects of the AMF power were different on both hand. Smaller SSA particles showed strong correlation of the SAR value to the intensity of the AMF power though larger SSA particles showed weaker correlation.
Conclusion:
Those results suggest that two maximum SAR value stand for the heating mechanism of magnetite nanoparticles represented by hysteresis loss and relaxation loss.

source

Tremor suppression in ECG

May 16th, 2009

Background:
Electrocardiogram recordings are very often contaminated by high-frequency noise usually power-line interference and EMG disturbances (tremor). Specific method for interference cancellation without affecting the proper ECG components, called subtraction procedure, was developed some two decades ago. Filtering out the tremor remains a priori partially successful since it has a relatively wide spectrum, which overlaps the useful ECG frequency band.MethodThe proposed method for tremor suppression implements the following three procedures. Contaminated ECG signals are subjected to moving averaging (comb filter with linear phase characteristic) with first zero set at 50 Hz to suppress tremor and PL interference simultaneously. The reduced peaks of QRS complexes and other relatively high and steep ECG waves are then restored by an introduced by us procedure called linearly-angular, so that the useful high frequency components are preserved in the range specified by the embedded in the ECG instrument filter, usually up to 125 Hz. Finally, a Savitzky-Golay smoothing filter is applied for supplementary tremor suppression outside the QRS complexes.
Results:
The results obtained show a low level of the residual EMG disturbances together with negligible distortion of the wave shapes regardless of rhythm and morphology changes.

source

BMC Bioinformatics update, 21 may

May 22nd, 2008

Mapping gene expression quantitative trait loci by singular value decomposition and independent component analysis

Background: The combination of gene expression profiling with linkage analysis has become a powerful paradigm for mapping gene expression quantitative trait loci (eQTL). To date, most studies have searched for eQTL by analyzing gene expression traits one at a time. As thousands of expression traits are typically analyzed, this can reduce power because of the need to correct for the number of hypothesis tests performed. In addition, gene expression traits exhibit a complex correlation structure, which is unutilized when analyzing traits individually. Results: To address these issues, we applied two different multivariate dimension reduction techniques, the Singular Value Decomposition (SVD) and Independent Component Analysis (ICA) to gene expression traits derived from a cross between two strains of Saccharomyces cerevisiae. Both methods decompose the data into a set of meta-traits, which are linear combinations of all the expression traits. The meta-traits were enriched for several Gene Ontology categories including metabolic pathways, stress response, RNA processing, ion transport, retro-transposition and telomeric maintenance. Genome-wide linkage analysis was performed on the top 20 meta-traits from both techniques. In total, 21 eQTL were found, of which 11 are novel. Interestingly, both cis and trans -linkages to the meta-traits were observed. Conclusions: These results demonstrate that dimension reduction methods are a useful and complementary approach for probing the genetic architecture of gene expression variation.

MD-SeeGH: a platform for integrative analysis of multi-dimensional genomic data

Background: Recent advances in global genomic profiling methodologies have enabled multi-dimensional characterization of biological systems. Complete analysis of these genomic profiles require an in depth look at parallel profiles of segmental DNA copy number status, DNA methylation state, single nucleotide polymorphisms, as well as gene expression profiles. Due to the differences in data types it is difficult to conduct parallel analysis of multiple datasets from diverse platforms. Results: To address this issue, we have developed an integrative genomic analysis platform MD-SeeGH, a software tool that allows users to rapidly and directly analyze genomic datasets spanning multiple genomic experiments. With MD-SeeGH, users have the flexibility to easily update datasets in accordance with new genomic builds, make a quality assessment of data using the filtering features, and identify genetic alterations within single or across multiple experiments. Multiple sample analysis in MD-SeeGH allows users to compare profiles from many experiments alongside tracks containing detailed localized gene information, microRNA, CpG islands, and copy number variations. Conclusion: MD-SeeGH is a new platform for the integrative analysis of diverse microarray data, facilitating multiple profile analyses and group comparisons.